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Epitranscriptomics & Cancer Adaptation : A.David

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Our research work focuses on the contribution of post-transcriptional mechanisms on cancer cell adaptation, in particular RNA epigenetic & translational control.

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Item Type Journal Article
Title Development and Optimization of a Machine-Learning Prediction Model for Acute Desquamation After Breast Radiation Therapy in the Multicenter REQUITE Cohort
Creator Aldraimli et al.
Author Mahmoud Aldraimli
Author Sarah Osman
Author Diana Grishchuck
Author Samuel Ingram
Author Robert Lyon
Author Anil Mistry
Author Jorge Oliveira
Author Robert Samuel
Author Leila E. A. Shelley
Author Daniele Soria
Author Miriam V. Dwek
Author Miguel E. Aguado-Barrera
Author David Azria
Author Jenny Chang-Claude
Author Alison Dunning
Author Alexandra Giraldo
Author Sheryl Green
Author Sara Gutiérrez-Enríquez
Author Carsten Herskind
Author Maarten Lambrecht
Author Laura Lozza
Author Tiziana Rancati
Author Victoria Reyes
Author Barry S. Rosenstein
Author Maria C. de Santis
Author Petra Seibold
Author Elena Sperk
Author R. Paul Symonds
Author Hilary Stobart
Author Begoña Taboada-Valadares
Author Christopher J. Talbot
Author Vincent J. L. Vakaet
Author Ana Vega
Author Liv Veldeman
Author Marlon R. Veldwijk
Author Adam Webb
Author Caroline Weltens
Author Catharine M. West
Author Thierry J. Chaussalet
Author Tim Rattay
Abstract PURPOSE: Some patients with breast cancer treated by surgery and radiation therapy experience clinically significant toxicity, which may adversely affect cosmesis and quality of life. There is a paucity of validated clinical prediction models for radiation toxicity. We used machine learning (ML) algorithms to develop and optimise a clinical prediction model for acute breast desquamation after whole breast external beam radiation therapy in the prospective multicenter REQUITE cohort study. METHODS AND MATERIALS: Using demographic and treatment-related features (m = 122) from patients (n = 2058) at 26 centers, we trained 8 ML algorithms with 10-fold cross-validation in a 50:50 random-split data set with class stratification to predict acute breast desquamation. Based on performance in the validation data set, the logistic model tree, random forest, and naïve Bayes models were taken forward to cost-sensitive learning optimisation. RESULTS: One hundred and ninety-two patients experienced acute desquamation. Resampling and cost-sensitive learning optimisation facilitated an improvement in classification performance. Based on maximising sensitivity (true positives), the "hero" model was the cost-sensitive random forest algorithm with a false-negative: false-positive misclassification penalty of 90:1 containing m = 114 predictive features. Model sensitivity and specificity were 0.77 and 0.66, respectively, with an area under the curve of 0.77 in the validation cohort. CONCLUSIONS: ML algorithms with resampling and cost-sensitive learning generated clinically valid prediction models for acute desquamation using patient demographic and treatment features. Further external validation and inclusion of genomic markers in ML prediction models are worthwhile, to identify patients at increased risk of toxicity who may benefit from supportive intervention or even a change in treatment plan.
Publication Advances in Radiation Oncology
Volume 7
Issue 3
Pages 100890
Date 2022
Journal Abbr Adv Radiat Oncol
Language eng
DOI 10.1016/j.adro.2021.100890
ISSN 2452-1094
Library Catalog PubMed
Extra Number: 3 PMID: 35647396 PMCID: PMC9133391
Tags clinic
Date Added 2023/11/23 - 12:48:29
Date Modified 2024/12/15 - 11:24:23
Notes and Attachments PubMed entry (Attachment)
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