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Epitranscriptomics & Cancer Adaptation : A.David

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Our research work focuses on the contribution of post-transcriptional mechanisms on cancer cell adaptation, in particular RNA epigenetic & translational control.

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Added by jacques.colinge
Last modified by standudu
Group name EquipeJC
Item Type Journal Article
Title The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling
Creator Alame et al.
Author Emmanuel Cornillot
Author Valère Cacheux
Author Valérie Rigau
Author Valérie Costes-Martineau
Author Vanessa Lacheretz-Szablewski
Author Jacques Colinge
Abstract Rationale: Primary central nervous system diffuse large B-cell lymphoma (PCNSL) is a rare and aggressive entity that resides in an immune-privileged site. The tumor microenvironment (TME) and the disruption of the immune surveillance influence lymphoma pathogenesis and immunotherapy resistance. Despite growing knowledge on heterogeneous therapeutic responses, no comprehensive description of the PCNSL TME is available. We hence investigated the immune subtypes of PCNSL and their association with molecular signaling and survival. Methods: Analysis of PCNSL transcriptomes (sequencing, n = 20; microarrays, n = 34). Integrated correlation analysis and signaling pathway topology enabled us to infer intercellular interactions. Immunohistopathology and digital imaging were used to validate bioinformatic results. Results: Transcriptomics revealed three immune subtypes: immune-rich, poor, and intermediate. The immune-rich subtype was associated to better survival and characterized by hyper-activation of STAT3 signaling and inflammatory signaling, e.g., IFN? and TNF-?, resembling the hot subtype described in primary testicular lymphoma and solid cancer. WNT/?-catenin, HIPPO, and NOTCH signaling were hyper-activated in the immune-poor subtype. HLA down-modulation was clearly associated with a low or intermediate immune infiltration and the absence of T-cell activation. Moreover, HLA class I down-regulation was also correlated with worse survival with implications on immune-intermediate PCNSL that frequently feature reduced HLA expression. A ligand-receptor intercellular network revealed high expression of two immune checkpoints, i.e., CTLA-4/CD86 and TIM-3/LAGLS9. TIM-3 and galectin-9 proteins were clearly upregulated in PCNSL. Conclusion: Altogether, our study reveals that patient stratification according to immune subtypes, HLA status, and immune checkpoint molecule quantification should be considered prior to immune checkpoint inhibitor therapy. Moreover, TIM-3 protein should be considered an axis for future therapeutic development.
Publication Theranostics
Volume 11
Issue 8
Pages 3565-3579
Date 2021
Journal Abbr Theranostics
Language eng
DOI 10.7150/thno.54343
ISSN 1838-7640
Library Catalog PubMed
Extra 00000 PMID: 33664848 PMCID: PMC7914352
Tags corresponding, last, original, phd
Date Added 2021/08/27 - 14:28:27
Date Modified 2022/02/28 - 18:46:07
Notes and Attachments PubMed entry (Attachment)
Texte intégral (Attachment)


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