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Epitranscriptomics & Cancer Adaptation : A.David

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Our research work focuses on the contribution of post-transcriptional mechanisms on cancer cell adaptation, in particular RNA epigenetic & translational control.

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Added by jacques.colinge
Group name EquipeJC
Item Type Journal Article
Title Cancer-associated fibroblast spatial heterogeneity and EMILIN1 expression in the tumor microenvironment modulate TGF-? activity and CD8+ T-cell infiltration in breast cancer
Creator Honda et al.
Author Chikako Kanno Honda
Author Sasagu Kurozumi
Author Takaaki Fujii
Author Didier Pourquier
Author Lakhdar Khellaf
Author Jun Horiguchi
Author Tetsunari Oyama
Author Ken Shirabe
Author Jacques Colinge
Author Takehiko Yokobori
Author Andrei Turtoi
Abstract Rationale: The tumor microenvironment (TME) and its multifaceted interactions with cancer cells are major targets for cancer treatment. Single-cell technologies have brought major insights into the TME, but the resulting complexity often precludes conclusions on function. Methods: We combined single-cell RNA sequencing and spatial transcriptomic data to explore the relationship between different cancer-associated fibroblast (CAF) populations and immune cell exclusion in breast tumors. The significance of the findings was then evaluated in a cohort of tumors (N=75) from breast cancer patients using immunohistochemistry analysis. Results: Our data show for the first time the degree of spatial organization of different CAF populations in breast cancer. We found that IL-iCAFs, Detox-iCAFs, and IFN?-iCAFs tended to cluster together, while Wound-myCAFs, TGF?-myCAFs, and ECM-myCAFs formed another group that overlapped with elevated TGF-? signaling. Differential gene expression analysis of areas with CD8+ T-cell infiltration/exclusion within the TGF-? signaling-rich zones identified elastin microfibrillar interface protein 1 (EMILIN1) as a top modulated gene. EMILIN1, a TGF-? inhibitor, was upregulated in IFN?-iCAFs directly modulating TGF? immunosuppressive function. Histological analysis of 75 breast cancer samples confirmed that high EMILIN1 expression in the tumor margins was related to high CD8+ T-cell infiltration, consistent with our spatial gene expression analysis. High EMILIN1 expression was also associated with better prognosis of patients with breast cancer, underscoring its functional significance for the recruitment of cytotoxic T cells into the tumor area. Conclusion: Our data show that correlating TGF-? signaling to a CAF subpopulation is not enough because proteins with TGF-?-modulating activity originating from other CAF subpopulations can alter its activity. Therefore, therapeutic targeting should remain focused on biological processes rather than on specific CAF subtypes.
Publication Theranostics
Volume 14
Issue 5
Pages 1873-1885
Date 2024
Journal Abbr Theranostics
Language eng
DOI 10.7150/thno.90627
ISSN 1838-7640
Library Catalog PubMed
Extra PMID: 38505604 PMCID: PMC10945331
Tags arc, Breast Neoplasms, CAF subpopulations, cancer invasion, CD8-Positive T-Lymphocytes, corresponding, Female, Humans, mabimprove, Membrane Glycoproteins, original, patient outcome, spatial transcriptomics, top, Transforming Growth Factor beta, tumor immunity, Tumor Microenvironment
Date Added 2024/09/08 - 16:55:42
Date Modified 2024/09/08 - 17:08:37
Notes and Attachments Full Text (Attachment)
PubMed entry (Attachment)


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